Hi,
Thank you for your help. First of all, I have tried to run the command David suggested:
flameo --cope=/Users/Thalamus_cortex/correlation/2ndLevel_FFX_LGB/LGB_4D.nii.gz --mask=/Users/Thalamus_cortex/correlation/2ndLevel_FFX_LGB/mask.nii.gz --dm=/Users/Thalamus_cortex/correlation/2ndLevel_FFX_LGB/2ndLevel_FFX_LGB.mat --tc=/Users/Thalamus_cortex/correlation/2ndLevel_FFX_LGB/2ndLevel_FFX_LGB.con --cs=/Users/Thalamus_cortex/correlation/2ndLevel_FFX_LGB/2ndLevel_FFX_LGB.grp --runmode=fe
Output:
Log directory is: logdir
Setting up:
ntptsing=18.000000
evs_group=1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
1.000000
No f contrasts
nevs=10
ntpts=18
ngs=1
nvoxels=157655
But I get the following error:
Fixed effects requires lower level variance, this must be passed in when doing fixed effects using the --varcope option.
An exception has been thrown
Fixed effects requires lower level variance, this must be passed in when doing fixed effects using the --varcope option.Trace: Gsmanager::run
The problem is I don't have lower level variance calculated in FSL, as my inputs are fisher's z-score correlation maps. Does anyone has an idea solving this?
Thanks again,
Fernanda
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