Hi Paul,
You can change the environment variable that controls that. Run the command below in your terminal and/or put it in your .bashrc file:
export FSLOUTPUTTYPE=NIFTI
Cheers,
David
> On Jul 29, 2016, at 10:23 AM, Paul GRAVEL <[log in to unmask]> wrote:
>
> Dear All,
>
> Is there a way to turn off file compression in FSL?
>
> I am currently testing a package that calls FSL, but it complains that it cannot read the .nii.gz files.
> Looking at the code of this package, it can only read .nii files. So before starting to modify the code, I was wondering if there was an easier way by going directly to the source.
>
> Many thanks!
>
> Paul
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