Dear Reza,
I am not aware of a keyword for XDS.INP, however, you can create a respective
HKL file with a command like
awk '{if (200 < $8 && $8 < 300) print $0}' INTEGRATE.HKL > myrange.HKL
and copy the header and last line from INTEGRATE.HKL into myrange.HKL
(change the limits according to your needs).
Next you rerun the CORRECT step in XDS. Beware that this is most likely what
you want, because CORRECT scales your data set, XSCALE deals with multiple
data set that you want to put on the same scale.
Best,
Tim
On Friday, July 01, 2016 01:34:41 PM Reza Khayat wrote:
> Hi,
>
> Is it possible to scale a range of images with XSCALE if I have already
> processed the entire data set with XDS? Thanks.
>
> Best wishes,
> Reza
>
> Reza Khayat, PhD
> Assistant Professor
> City College of New York
> Department of Chemistry
> New York, NY 10031
>
> ________________________________________
> From: CCP4 bulletin board <[log in to unmask]> on behalf of Kay
> Diederichs <[log in to unmask]> Sent: Thursday, June 16, 2016
> 2:38 AM
> To: [log in to unmask]
> Subject: Re: [ccp4bb] visualise xds predicted spots - SUMMARY
>
> Andy Arvans wrote to me:
> "
> I compiled a couple new binaries you can try:
>
> http://www.scripps.edu/~arvai/adxv/adxv_1.9.11beta/adxv.x86_64FC18
> http://www.scripps.edu/~arvai/adxv/adxv_1.9.11beta/adxv.x86_64Centos6
>
> Andy
> "
>
> These work well for me.
>
> Kay
>
> On Wed, 15 Jun 2016 11:06:25 +0100, Kay Diederichs <kay.diederichs@UNI-
KONSTANZ.DE> wrote:
> >On Wed, 15 Jun 2016 10:17:21 +0200, Tim Gruene <[log in to unmask]> wrote:
> >...
> >
> >>1) Fred Dyda (and Kay Diederichs in a personal email) pointed at
> >>generate_ADX on the xds-wiki
> >>(http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Generate_adx)
> >>The program is available as source code and compiles out of the box. This
> >>program does exactly what I asked for: when the program is run in the XDS
> >>processing directory, it creates, for every image file, a file with the
> >>suffix .adx. When given to adxv as second input, it highlights the
> >>reflections (with their centroids) on the frame. When clicked, the hkl
> >>values are provided.>
> >unfortunately this seems to work (for me) with adxv 1.9.8 x86_64 for RHEL4,
> >but not with 1.9.9 x86_64 for RHEL5 nor with current 1.9.10 for RHEL6. In
> >the latter two versions, the HKL values in the "Adxv Predictions" window
> >are somehow scrambled. Which version works for you?>
> >>@Kay: maybe this feature could be implemented in xdsgui, as all
> >>information is already there in INTEGRATE.HKL?
> >
> >well, INTEGRATE.HKL (or better XDS_ASCII.HKL) can be multi-megabyte files,
> >and they are sorted on unique indices, not on frame numbers. That means
> >that XDSGUI would need to read the file and (at least) re-sort it, to
> >enable a reasonably fast lookup of HKL values when displaying a frame.
> >Possible to do, but currently low in priority.
> >
> >BTW the compression algorithm of PCK files was AFAIK invented by JP
> >Abrahams, and used e.g. as a format of MAR image plate data. It is in no
> >way specific to XDS.
> >
> >Thanks for the summary!
> >
> >Kay
--
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Paul Scherrer Institut
Dr. Tim Gruene
- persoenlich -
OFLC/102
CH-5232 Villigen PSI
phone: +41 (0)56 310 5297
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