Dear Reza,
I forgot: you have to rename myrange.HKL to INTEGRATE.HKL for this to work.
Best,
Tim
On Friday, July 01, 2016 04:08:43 PM Tim Gruene wrote:
> Dear Reza,
>
> I am not aware of a keyword for XDS.INP, however, you can create a
> respective HKL file with a command like
>
> awk '{if (200 < $8 && $8 < 300) print $0}' INTEGRATE.HKL > myrange.HKL
>
> and copy the header and last line from INTEGRATE.HKL into myrange.HKL
> (change the limits according to your needs).
>
> Next you rerun the CORRECT step in XDS. Beware that this is most likely what
> you want, because CORRECT scales your data set, XSCALE deals with multiple
> data set that you want to put on the same scale.
>
> Best,
> Tim
>
> On Friday, July 01, 2016 01:34:41 PM Reza Khayat wrote:
> > Hi,
> >
> > Is it possible to scale a range of images with XSCALE if I have already
> > processed the entire data set with XDS? Thanks.
> >
> > Best wishes,
> > Reza
> >
> > Reza Khayat, PhD
> > Assistant Professor
> > City College of New York
> > Department of Chemistry
> > New York, NY 10031
> >
> > ________________________________________
> > From: CCP4 bulletin board <[log in to unmask]> on behalf of Kay
> > Diederichs <[log in to unmask]> Sent: Thursday, June 16, 2016
> > 2:38 AM
> > To: [log in to unmask]
> > Subject: Re: [ccp4bb] visualise xds predicted spots - SUMMARY
> >
> > Andy Arvans wrote to me:
> > "
> > I compiled a couple new binaries you can try:
> >
> > http://www.scripps.edu/~arvai/adxv/adxv_1.9.11beta/adxv.x86_64FC18
> > http://www.scripps.edu/~arvai/adxv/adxv_1.9.11beta/adxv.x86_64Centos6
> >
> > Andy
> > "
> >
> > These work well for me.
> >
> > Kay
> >
> > On Wed, 15 Jun 2016 11:06:25 +0100, Kay Diederichs <kay.diederichs@UNI-
>
> KONSTANZ.DE> wrote:
> > >On Wed, 15 Jun 2016 10:17:21 +0200, Tim Gruene <[log in to unmask]> wrote:
> > >...
> > >
> > >>1) Fred Dyda (and Kay Diederichs in a personal email) pointed at
> > >>generate_ADX on the xds-wiki
> > >>(http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Generate_adx
> > >>)
> > >>The program is available as source code and compiles out of the box.
> > >>This
> > >>program does exactly what I asked for: when the program is run in the
> > >>XDS
> > >>processing directory, it creates, for every image file, a file with the
> > >>suffix .adx. When given to adxv as second input, it highlights the
> > >>reflections (with their centroids) on the frame. When clicked, the hkl
> > >>values are provided.>
> > >
> > >unfortunately this seems to work (for me) with adxv 1.9.8 x86_64 for
> > >RHEL4,
> > >but not with 1.9.9 x86_64 for RHEL5 nor with current 1.9.10 for RHEL6. In
> > >the latter two versions, the HKL values in the "Adxv Predictions" window
> > >are somehow scrambled. Which version works for you?>
> > >
> > >>@Kay: maybe this feature could be implemented in xdsgui, as all
> > >>information is already there in INTEGRATE.HKL?
> > >
> > >well, INTEGRATE.HKL (or better XDS_ASCII.HKL) can be multi-megabyte
> > >files,
> > >and they are sorted on unique indices, not on frame numbers. That means
> > >that XDSGUI would need to read the file and (at least) re-sort it, to
> > >enable a reasonably fast lookup of HKL values when displaying a frame.
> > >Possible to do, but currently low in priority.
> > >
> > >BTW the compression algorithm of PCK files was AFAIK invented by JP
> > >Abrahams, and used e.g. as a format of MAR image plate data. It is in no
> > >way specific to XDS.
> > >
> > >Thanks for the summary!
> > >
> > >Kay
>
> --
> --
> Paul Scherrer Institut
> Dr. Tim Gruene
> - persoenlich -
> OFLC/102
> CH-5232 Villigen PSI
> phone: +41 (0)56 310 5297
>
> GPG Key ID = A46BEE1A
--
--
Paul Scherrer Institut
Dr. Tim Gruene
- persoenlich -
OFLC/102
CH-5232 Villigen PSI
phone: +41 (0)56 310 5297
GPG Key ID = A46BEE1A
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