Dear Elizabeth,
On 28 May 2016, at 20:00, Elizabeth DuPre wrote:
> Hello,
>
> Thank you for your reply! I am interested in displaying the results of
> the
> statistical analysis.
>
> I had originally been attempting to separate fields in the SPM.mat
> file,
> but I have had some success treating the .gii/.dat of the spmT file as
> a
> .shape.gii and the MNI surface template as a .surf.gii to import them
> into
> Connectome Workbench for visualization on an inflated surface. Would
> you be
> able to confirm that these reflect the same information as the
> SPM.mat?
SPM.mat will contain all information that is necessary to perform the
statistical analysis (including defined contrasts). Therefore, the
spmT-files are the results of that analysis and should correspond to
that information.
Best,
Christian
>
> Thank you again,
>
> Elizabeth
>
> On Fri, May 27, 2016 at 5:40 AM, Christian Gaser <
> [log in to unmask]> wrote:
>
>> Dear Elizabeth,
>>
>> On Mon, 23 May 2016 17:07:00 -0400, Elizabeth DuPre
>> <[log in to unmask]>
>> wrote:
>>
>>> Hello,
>>>
>>> I am trying to display surface results from CAT12 in Connectome
>>> Workbench.
>>> I'm running into difficulties as gii files from CAT12 have 3 data
>>> arrays
>>> instead of the 2 required by Connectome Workbench.
>> Do you want to display the results of the statistical analysis or the
>> thickness files of the CAT12 output? The latter should work, but the
>> statistical analysis will result in separate gii and dat files that
>> are not
>> compatible with most gifti-tools. If I know your exact workflow I can
>> probably help in providing a conversion tool.
>>
>> Best,
>>
>> Christian
>>
>>>
>>> It seems that 'cdata' is retained as a separate array instead of
>>> being
>>> distributed throughout the XML file, as in the .surf.gii files
>>> distributed
>>> with Workbench. Any ideas how to reformat the .gii files from CAT12
>>> for
>>> this purpose?
>>>
>>> Any and all insight is appreciated !
>>>
>>> Thank you,
>>>
>>> Elizabeth
>>>
>>> --
>>> Elizabeth DuPre
>>> Graduate Student
>>> Department of Human Development
>>> Cornell University
>>>
>>
>>
>>
>
>
> --
> Elizabeth DuPre
> Graduate Student
> Department of Human Development
> Cornell University
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