If I want do do a VBM analysis on T2 anatomical scans am I able to simply run the fslvbm pipeline on the T2 scans or do I need to do something different?
fslvbm_1_bet - carry out brain extraction on all T2 images
fslvbm_2_template - create the study-specific symmetric grey matter template
fslvbm_3_proc - register all the grey matter images to the template, modulate and smooth them with different kernel sizes and finally runs an initial GLM analysis for qualitative evaluation
randomise - carry out voxelwise GLM analysis using permutation testing
Thanks
Tony
Tony Goldstone
Computational, Cognitove and Clinical Neuroimaging Laboratory
Imperial College London
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