Dear Fred,
You are absolutely right: apologies for the rushed reply and rash
comment. For some reason I pictured a "live" situation on a beamline,
where you would only have a few images and the spots harvested from
them by (say) COLSPOT, whereas Kay's program works from the final,
post-processing file where everything is known and checked.
I stand (or rather, sit) corrected :-) .
With best wishes,
Gerard.
--
On Tue, Jun 14, 2016 at 07:02:03PM -0400, Dyda wrote:
> Dear Gerard,
>
> I'm not sure.
>
> Attached is an image from ADXV with the predicted positions
> from XDS's XDS_ASCII.HKL as blue boxes, at least that's what I think,
> following Kay's procedure.
>
> (Yes, one quadrant of one of the chips has "issues", and no, I didn't
> mount the crystal like
> this...)
>
> Fred
>
>
> Gerard Bricogne wrote:
> >
> > Dear Fred,
> >
> > I am not sure that this is correct. Kay's program seems to only
> > handle "anonymous" spots, collected out of images prior to indexing;
> > whereas Tim is looking for a program that would allow him to visualise
> > *indexed spots*, i.e. post-indexing, with access to the indices of
> > each spot he chooses to look at interactively.
> >
> > The difference is profound :-) .
> >
> > With best wishes,
> >
> > Gerard.
> >
> > --
> > On Tue, Jun 14, 2016 at 01:59:54PM -0400, Dyda wrote:
> > > Hi Tim,
> > >
> > > I think what you are looking for is http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Generate_adx
> > >
> > > You need to have ADXV running of course. (and a compiler)
> > >
> > > Fred
> > > [32m*******************************************************************************
> > > Fred Dyda, Ph.D. Phone:301-402-4496
> > > Laboratory of Molecular Biology Fax: 301-496-0201
> > > DHHS/NIH/NIDDK e-mail:[log in to unmask]
> > > Bldg. 5. Room 303
> > > Bethesda, MD 20892-0560 URGENT message e-mail: [log in to unmask]
> > > Google maps coords: 39.000597, -77.102102
> > > http://www2.niddk.nih.gov/NIDDKLabs/IntramuralFaculty/DydaFred
> > > *******************************************************************************[m
> >
> > --
> >
> > ===============================================================
> > * *
> > * Gerard Bricogne [log in to unmask] *
> > * *
> > * Global Phasing Ltd. *
> > * Sheraton House, Castle Park Tel: +44-(0)1223-353033 *
> > * Cambridge CB3 0AX, UK Fax: +44-(0)1223-366889 *
> > * *
> > ===============================================================
>
> --
> [32m*******************************************************************************
> Fred Dyda, Ph.D. Phone:301-402-4496
> Laboratory of Molecular Biology Fax: 301-496-0201
> DHHS/NIH/NIDDK e-mail:[log in to unmask]
> Bldg. 5. Room 303
> Bethesda, MD 20892-0560 URGENT message e-mail:
> [log in to unmask]
> Google maps coords: 39.000597, -77.102102
> http://www2.niddk.nih.gov/NIDDKLabs/IntramuralFaculty/DydaFred
> *******************************************************************************[m
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