Dear Jaime,
I couldn’t replicate this error on my systems yet. Please can you replace your cat_surf_createCS.m with the attached file and send me the file debug.mat (saved in your current folder) with the upload link that I will send you in a separate mail.
Best,
Christian
On Tue, 31 May 2016 00:08:37 +0100, Jaime Ide <[log in to unmask]> wrote:
>Dear Dr. Gaser and all,
>
>I am having the same problem reported earlier by Paul Chou when I try to perform "Surface and thickness estimation" in CAT12.
>070015 2016-03-31 23:50 218 Re: Some questions about CAT12 r912 SPM
>070009 2016-03-31 23:50 236 Re: Some questions about CAT12 r912 SPM
>069971 2016-03-29 01:14 181 Some questions about CAT12 r912 SPM
>
>In short, the problem happens during
>>> Thickness / Depth mapping
>When it tries to load the file "lh.central.*.gii" within the function "read_gifti_file".
>
>The complete error report is at the end of this message.
>I am using
>- MatlabR2015b
>- SPM12b: v6225
>- SPM12b: spm_cat12 (v916)
>- CAT r938
>
>I would appreciate to know how to solve this error.
>Other things in CAT12 work great.
>
>Thank you very much in advance,
>Jaime
>
>%%%% BEGIN %%%%
>
>Error using read_gifti_file (line 17)
>[GIFTI] Loading of XML file gifti.case1.inflated.L.surf.gii failed.
>
>Error in gifti (line 71)
> this = read_gifti_file(varargin{1},giftistruct);
>
>Warning: Control Character '\d' is not valid. See 'doc sprintf' for control
>characters valid in the format string.
>> In cat_io_cprintf (line 147)
> In cat_run_newcatch (line 32)
> In cat_run>run_job (line 246)
> In cat_run (line 106)
> In cfg_run_cm (line 29)
> In cfg_util>local_runcj (line 1673)
> In cfg_util (line 953)
> In cfg_ui>MenuFileRun_Callback (line 707)
> In gui_mainfcn (line 95)
> In cfg_ui (line 53)
>
>------------------------------------------------------------------------
>CAT Preprocessing error: : . 17 - read_gifti_file
> 71 - gifti
> 378 - cat_surf_createCS
> 1668 - cat_main
> 541 - cat_run_job
> 13 - cat_run_newcatch
> 246 - run_job
> 106 - cat_run
> 29 - cfg_run_cm
> 1673 - local_runcj
> 953 - cfg_util
> 707 - MenuFileRun_Callback
> 95 - gui_mainfcn
> 53 - cfg_ui
>------------------------------------------------------------------------
>
>Print 'Graphics' figure to:
> C:\jaime\data_sample_CAT\report\catreport_AleT_fstructural.pdf
>Failed 'CAT12: Segmentation'
>Error using read_gifti_file (line 17)
>[GIFTI] Loading of XML file C:\jaime\data_sample_CAT\surf\lh.central.AleT_fstructural.gii failed.
>In file "C:\spm12b\@gifti\private\read_gifti_file.m" (v5101), function "read_gifti_file" at line 17.
>In file "C:\spm12b\@gifti\gifti.m" (v5322), function "gifti" at line 71.
>In file "C:\spm12b\toolbox\cat12\cat_surf_createCS.m" (v937), function "cat_surf_createCS" at line 378.
>In file "C:\spm12b\toolbox\cat12\cat_main.m" (v928), function "cat_main" at line 1668.
>In file "C:\spm12b\toolbox\cat12\cat_run_job.m" (v936), function "cat_run_job" at line 541.
>In file "C:\spm12b\toolbox\cat12\cat_run_newcatch.m" (???), function "cat_run_newcatch" at line 13.
>In file "C:\spm12b\toolbox\cat12\cat_run.m" (v936), function "run_job" at line 246.
>In file "C:\spm12b\toolbox\cat12\cat_run.m" (v936), function "cat_run" at line 106.
>
>The following modules did not run:
>Failed: CAT12: Segmentation
>
>%%% % END %%%%
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