Dear Jesper,
I am also interested in the way of automatic quality check of DWI data. I saw in HCP pipelines
https://github.com/Washington-University/Pipelines/blob/master/DiffusionPreprocessing/scripts/run_eddy.sh
that the eddy_cuda has option -repol which should perform outlier detection/replacement, but all my 5.0.9 versions of eddy, eddy_openmp and eddy_cuda (obtained by NeuroDebian and CentOS) end with the error:
eddy: msg=--rep_ol cannot be used for this version of eddy
terminate called after throwing an instance of 'EDDY::EddyException'
what(): eddy: msg=--rep_ol cannot be used for this version of eddy
Aborted
Does it mean that the outlier detection/replacement is not yet publicly available for eddy?
However, current 5.0.9 versions of eddy (without -repol option) DO produce *,eddy_outlier_map and *.eddy_outlier_report files.
What is therefore current state of outlier handling in eddy 5.0.9?
Could you please also send me the pdf of relevant ISMRM 2015 poster?
Thank you otherwise for the wonderful eddy tool!
Regards,
Antonin Skoch
Institute for Clinical and Experimental Medicine
Czech Republic
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