Hello FSL experts!
I want to try using eddy correction on some DTI data from mouse and was wondering which of these two eddy command options would be best. Unfortunately, I don't have images with different blip-encoding, so I can't run topup, but I do have the fieldmaps, so I'm also going to try fugue for removing fieldmap distortions.
I already tried without any form of correction and got some promising results, but had to exclude 6 animals due to noise in their images, so I'm hoping that some form of processing the images prior to dtifit may help enhance what I currently have and allow me to reinclude some or all of the currently excluded 6.
Thank you!
Yael
|