Dear FSL experts,
I am currentry doing a FSL VBM analysis with a sample of 54 participants, controls and patients, and every time I try to launch the second script, that is, fslvbm_2_template -n; I get an error message I cannot resolve.
I have organized the images with nifti data in a folder called fslvbm, and inside another folder called struc with bet images. Moreover, the images name contains a first part with group identification, a second part referring to the participant, and the last part as the image type description (T1).
I attach the recursive error below.
Thanks in advance!
Best regards,
Cristian.
chmod: cannot access 'fslvbm2a': No such file or directory
/usr/share/fsl/5.0/bin/fsl_sub: 359: exit: Illegal number: -1
Running segmentation: ID=Task file (./fslvbm2a) does not exist
chmod: cannot access 'fslvbm2b': No such file or directory
/bin/sh: 1: Syntax error: word unexpected (expecting ")")
Running initial registration: ID=
/usr/share/fsl/5.0/bin/fsl_sub: 410: exit: Illegal number: -1
Creating first-pass template: ID=The command you have requested cannot be found or is not executable
chmod: cannot access 'fslvbm2d': No such file or directory
/usr/share/fsl/5.0/bin/fsl_sub: 410: exit: Illegal number: -1
Running registration to first-pass template: ID=The command you have requested cannot be found or is not executable
/usr/share/fsl/5.0/bin/fsl_sub: 410: exit: Illegal number: -1
Creating second-pass template: ID=The command you have requested cannot be found or is not executable
Study-specific template will be created, when complete, check results with:
fslview struc/template_4D_GM
and turn on the movie loop to check all subjects, then run:
fslview /usr/share/fsl/5.0/data/standard/tissuepriors/avg152T1_gray struc/template_GM
to check general alignment of mean GM template vs. original standard space template.
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