Dear ccp4 users,
I was wondering if anyone of you does perform principal component
analysis on multiple sequence alignment and, if any, which programs use
to perform the PCA. I see that Jalview has a built-in function to run a
PCA but I am unable to proper visualize the 3D plot after the analysis.
So, did you ever perform a PCA on a MSA?
Thanks in advance
Fulvio
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