Hi FSL experts!
I have a custom (ANTs generated) template in 1mm Talairach space that I use as a template for functional analyses in AFNI. I've become interested in some structural questions and was hoping to use FSL-VBM on the same subjects' T1-images.
Is there a way to feed FSL-VBM this same template as its "standard-space" image, in lieu of the 2mm MNI152, or would the pipeline fail for not having apriori tissue priors?
Ideally I want to use the same Talairach-space ROIs from my AFNI functional data, to extract GM volumes and densities from FSL-VBM. Any insight on what would be the most efficient way to make the analysis streams overlap would be greatly appreciated!
Thanks so much,
Jared Saletin PhD
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Brown University
Dept. Psychiatry and Human Behavior
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