I am sorry I forgot to mention that I run FSL version 5.0.9 on a linux
machine with 3.12 kernel
Cheers
Pavel
On 19 April 2016 at 11:52, Pavel Hok <[log in to unmask]> wrote:
> Dear FSL experts,
>
> although I have noticed similar posts I guess this is a separate
> problem. Until now, eddy (eddy_openmp) was running fine for me.
> However, I was quite unsatisfied with the eddy current correction
> results of my last analysis so I tried the --fwhm=10,0,0,0,0 option as
> suggested on the website. Unfortunately, eddy crashes immediately with
> the following error whenever I try the command. Without the option it
> works again so I guess it cannot be problem with the b vectors.
>
> eddy_openmp --imain=/mydir/nifti/dti.nii.gz
> --mask=/mydir/topup/nodif_brain_mask.nii.gz
> --acqp=/mydir/topup/topup.txt --index=/mydir/topup/index.txt
> --topup=/mydir/topup/topup --out=/mydir/eddy/data
> --bvecs=/mydir/topup/bvecs --bvals=/mydir/topup/bvals
> --fwhm=10,0,0,0,0
> Segmentation violation, Invalid permission for address, Offending
> address = 0x7f8177f49000
> /myscriptdir/fdt_pipe.sh: line 340: 19559 Segmentation fault $1
>
> Any ideas? Thanks in advance!
>
> Cheers
>
> Pavel
>
> --
> -------------------------------------------------------------------------------
> -- MUDr. Pavel Hok
> -------------------------------------------------------------------------------
> -- Laboratoř funkční magnetické rezonance
> -- Neurologická klinika
> -- Lékařská fakulta
> -- Univerzita Palackého v Olomouci
> -- Fakultní nemocnice Olomouc
> -------------------------------------------------------------------------------
> -- Laboratory of functional magnetic resonance imaging
> -- Department of Neurology
> -- Faculty of Medicine and Dentistry
> -- Palacky University Olomouc
> -- University Hospital Olomouc
> -- Czech Republic
> -------------------------------------------------------------------------------
> -- I.P. Pavlova 6, 775 20 Olomouc
> -- web: fmri.upol.cz
> -- tel.: +420 588 443 418
> -- e-mail: [log in to unmask]
> -------------------------------------------------------------------------------
--
-------------------------------------------------------------------------------
-- MUDr. Pavel Hok
-------------------------------------------------------------------------------
-- Laboratoř funkční magnetické rezonance
-- Neurologická klinika
-- Lékařská fakulta
-- Univerzita Palackého v Olomouci
-- Fakultní nemocnice Olomouc
-------------------------------------------------------------------------------
-- Laboratory of functional magnetic resonance imaging
-- Department of Neurology
-- Faculty of Medicine and Dentistry
-- Palacky University Olomouc
-- University Hospital Olomouc
-- Czech Republic
-------------------------------------------------------------------------------
-- I.P. Pavlova 6, 775 20 Olomouc
-- web: fmri.upol.cz
-- tel.: +420 588 443 418
-- e-mail: [log in to unmask]
-------------------------------------------------------------------------------
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