Hi Xuan
It is difficult to tell. Version 5.04 is ~3 years old and since then we have corrected some problems with the monitor. It is very likely that if you install the latest version you will be fine, let us know if not.
Cheers
Stam
On 13 Apr 2016, at 09:22, Xuan Ouyang <[log in to unmask]> wrote:
> Hello,
>
> we’re trying to begin a probtrackx analysis and are getting stuck in bedpostX. Eddy current correction runs correctly and we’re use fslroi to make the nodif.nii.gz file and bet to make nodifbrainmask. However, bedpostx keeps crashing and we can’t figure out why.
>
> All the files are present (data.nii.gz, bvecs, bvals, nodif_brain_mask.nii.gz) and we’ve checked them in fslview to make sure the data isn’t messed up.
>
> Here’s the error we’re getting:
>
> Making bedposts directory structure
>
> Queuing preprocessing stages
>
> Quitting parallel processing stage
>
> 0 slices processed
>
> "Errors: /usr/local/fsl/bin/bedpostx: line 320: 20841 User defined signal 1 $(subjdir).bedpostX/monitor”
>
> We’re using Linux 2.6.32-358.el6.x86_64 and FSL 5.0.4. Perhaps it's a parallelization problem?
>
> Please help!
>
> Thanks,
> Xuan
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