Hi Ella,
Looks like you have a space between your ‘--' and ‘thresh’ as you have typed it. Try removing this space and run again.
Cheers,
Donal
> On 21 Apr 2016, at 12:26, Ella Hinton <[log in to unmask]> wrote:
>
> Hi all,
>
> I'm having trouble getting my cluster command to work, following randomise. I keep getting the same error that the -- option is unrecognised - ignored.
>
> Here are the commands I've tried (based on the randomise and cluster wiki pages). I've got almost identical ones to work before, so I'm not sure what I'm doing wrong.
>
> cluster --in=PM_AM_thresh_tstat1.nii.gz -- thresh=0.0001 --oindex=PM_AM_cluster_index --olmax=PM_AM_max.txt --osize=PM-AM_cluster_size --mm
>
> or
>
> cluster -i PM_AM_thresh_tstat1.nii.gz -t 0.0001 -o PM_AM_cluster_index --osize=PM-AM_cluster_size --mm
>
> Any advice, as always, would be most appreciated.
>
> best wishes
> Ella
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