Hello,
The latest version of fsl should be available from neurodebian. Can you check that you have the repository set up in:
/etc/apt/sources.list.d/neurodebian.sources.list
also what is the result of running
apt-cache policy fsl-complete
Kind Regards
Matthew
> Hello,
>
> I have taken over as sysadmin for the neuroimaging department here. I have installed a new machine, but I am a little confused with how to integrate FSL.
>
> The way it appears to be set up currently
> The public NFS space looks like it has FSL 5.0 installed on it.
>
> On login, each machine runs a script located on the public space `fsl.sh` that sets LD_LIBRARY_PATH and FSLDIR, etc
>
> My machine (Ubuntu 12.04) appears to have FSL 5.0 installed, and when I run commands such as flirt, etc, everything works. It looks like even though FSL is installed on the public space, the binaries for commands are still local, on my machine.
>
> So I tried to install FSL on the new machine, but it appears that only FSL 4.1 is available. This is after including the neurodebian repository. Since the script in the public space specifically references version 5.0, this is causing set up problems.
>
> How did the previous sysadmin install FSL 5.0 on the Ubuntu 12.04 machine? Is it possible he got it from github or something similar?
>
> Any suggestions would be welcome. I would just make it a local install for the machine, but the bash.bashrc file required needs FSL 5.0, so I'm kinda lost
>
> Thanks,
>
> --
> Elijah Rockers
> Research Data Analyst
> Houston Methodist Neurological Institute
> O: 713 363 7729
> Houston Methodist. Leading Medicine.
>
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