Dear Stam,
thank you for your answer!
I used the following datasets:
HCP_mgh_1031_MR_ep2d_Diffusion_Gradwarped,_Eddy_Current_Corrected_Br_20141002144129918_S227836_I445964.nii.gz (renamed to „data.nii.gz“)
mgh_1031_bvals_ep2d_eddy.txt (renamed to „bvals“)
mgh_1031_bvecs_fsl_moco_norm_ep2d_eddy.txt (renamed to „bvecs“)
and created a folder named dtifit. There, I ran the dtifit command with FSL 5.0 (/usr/share/fsl/5.0/bin/dtifit --data= mgh_1031/dtifit/data --out=mgh_1031/dtifit/dti --mask= mgh_1031/dtifit/nodif_brain_mask --bvecs=mgh_1031/dtifit/bvecs --bvals=mgh_1031/dtifit/bvals) and studies the outcome.
Thank you,
best,
Verena
|