Hi
Thx Jesper, got it to work
Best Regards,
Björn Åström
Department of clinical neuroscience
Umeå University
> On 17 Mar 2016, at 16:15, Jesper Andersson <[log in to unmask]> wrote:
>
> Hi Björn,
>
> it looks like n023_5 isn’t where eddy expected to find it, or is in a format it cannot read.
>
> Jesper
>
> On 17 Mar 2016, at 15:11, Björn Åström <[log in to unmask]> wrote:
>
>> Hi again
>>
>> Thx Niels for your swift response! I’ve just started using fsl.
>> The symlink seemed fix it, but now when I try to run the eddy command I get the following error:
>>
>> Image Exception : #22 : : ERROR: Could not open image n023_5 terminate called after throwing an instance of ‘RBD_COMMON: :BaseException'
>>
>> “n023_5" is my “imain” input.
>>
>> Any thoughts on what could be wrong?
>>
>> /B
>>> On 17 Mar 2016, at 10:12, Niels Bergsland <[log in to unmask]> wrote:
>>>
>>> Hi,
>>> You should have "eddy_openmp" and "eddy_cuda". As my system doesn't
>>> have a GPU, I just made a symlink to eddy_openmp (e.g. cd
>>> ${FSLDIR}/bin ; ln -s eddy_openmp eddy)
>>>
>>>
>>>
>>>
>>>
>>> On Thu, Mar 17, 2016 at 9:37 AM, Björn Åström <[log in to unmask]> wrote:
>>>> Hi FSL experts
>>>>
>>>> I'v recently downloaded and installed fsl 5.0.9 using the fslinstaller.py and everything worked just fine until I tried using eddy. I can't find eddy on my system. Is eddy not included in the default installation, and if so, how do I get a hold of it? I'm currently running Redhat 6.0.
>>>>
>>>> I've seen that there are similiar posts about eddy in fsl 5.0.9., but I haven't found a reply. Thanks in advance for any help concerning this!
>>>>
>>>> Regards,
>>>>
>>>> Bjorn Astrom
>>>> Clinical neuroscience
>>>> Umea university, Sweden
>>>
>>>
>>>
>>> --
>>> Niels Bergsland
>>> Integration Director
>>> Buffalo Neuroimaging Analysis Center
>>> 100 High St. Buffalo NY 14203
>>> [log in to unmask]
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