On Fri, 25 Mar 2016, Jiri Keller wrote:
> Hi,
> Matthias Heil wrote in Neurodebian-devel list in Nov 2015 about the
> problem with unmet dependency of fslview in Debian 9. I got in some
> dependency troubles, which I decided to solve by upgrading to Debian
> Strech. However, I got stuck as well.
> The problem is that fsl (and fslview) is compiled against libstdc++5, but
> only libstdc++6 is available on newer system. Would it be possible to
> provide updated package(s) - for me especially fslview, linked with
> libstdc++6 ? I think that this problem is still unsolved.
CCing expanded reply sent to Matthias et al in private correspondence.
sorry -- fslview can't be not only installed but also even built in current debian stretch/testing due to
pbuilder-satisfydepends-dummy : Depends: libvtk5-dev which is a virtual package and is not provided by any available package.
Depends: libvtk5-qt4-dev which is a virtual package and is not provided by any available package.
since vtk5 currently is absent from testing. As you might know, in
general, usually (not during freeze) Debian testing is a "moving target"
with aggressive automatic removal of packages for various reasons. So
it is not uncommon to have some packages missing from it for short or
extended period of time. So I would recommend running
testing/unstable mix (that is what I do) with priority set for testing
if you really want to stay at the forefront ;)
Meanwhile I did upload fresh rebuild of fslview with some minor fixups to
packaging to debian sid.
Dear fsl folks, please consider adopting (if fslview in its original
form is still a release target) attached minor patch with some
spelling fixes (although I do truly like "demoninator" word more)
Cheers,
--
Yaroslav O. Halchenko
Center for Open Neuroscience http://centerforopenneuroscience.org
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
--- a/fsl/miscmaths/miscmaths.cc
+++ b/fsl/miscmaths/miscmaths.cc
@@ -2220,7 +2220,7 @@ int conjgrad(ColumnVector& x, const Matr
rk2rk2 = rk1rk1; // from before
rk1rk1 = (rk1.t() * rk1).AsScalar();
if (rk2rk2<1e-10*rk1rk1) {
- cerr << "WARNING:: Conj Grad - low demoninator (rk2rk2)" << endl;
+ cerr << "WARNING:: Conj Grad - low denominator (rk2rk2)" << endl;
if (rk2rk2<=0) {
cerr << "Aborting conj grad ..." << endl;
return 1;
--- a/src/fslview/histogramoptionsdialog.ui
+++ b/src/fslview/histogramoptionsdialog.ui
@@ -168,7 +168,7 @@ Try looking at z-stat images with this t
<string>Set the number of bins:</string>
</property>
<property name="whatsThis" stdset="0">
- <string>Normally the number of bins is automatically calculated according to the bin size which, in turn, is calculated by determing a natural enclosing range for the data.
+ <string>Normally the number of bins is automatically calculated according to the bin size which, in turn, is calculated by determining a natural enclosing range for the data.
The number of calculated bins is shown in the box on the right. Toggle this checkbox to specify this number and the histogram will be recomputed when you click on "OK".</string>
</property>
--- a/fsl/utils/options.h
+++ b/fsl/utils/options.h
@@ -57,7 +57,7 @@ namespace Utilities {
}
/**
- Throw this exception if an error occured inside the Options package.
+ Throw this exception if an error occurred inside the Options package.
*/
class X_OptionError: public std::exception {
public:
--- a/src/fslview/talairachwidget.cpp
+++ b/src/fslview/talairachwidget.cpp
@@ -136,7 +136,7 @@ void TalairachWidget::update(const Curso
m_text->setText( labels.join("<br>") );
} catch (...) {
QMessageBox::warning( this, "FSLView",
- "AtlasWidget: An unexpected exception has occured!" );
+ "AtlasWidget: An unexpected exception has occurred!" );
}
}
--- a/src/fslview/overlaydockbase.ui
+++ b/src/fslview/overlaydockbase.ui
@@ -417,7 +417,7 @@
</size>
</property>
<property name="toolTip">
- <string>Transparency Value<hr>1 is opaque, 0 is tranparent.</string>
+ <string>Transparency Value<hr>1 is opaque, 0 is transparent.</string>
</property>
<property name="singleStep">
<number>1</number>
--- a/src/fslview/overlaywidgetbase.ui
+++ b/src/fslview/overlaywidgetbase.ui
@@ -418,7 +418,7 @@
</size>
</property>
<property name="toolTip" >
- <string>Transparency Value<hr>1 is opaque, 0 is tranparent.</string>
+ <string>Transparency Value<hr>1 is opaque, 0 is transparent.</string>
</property>
<property name="singleStep" >
<number>1</number>
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