Hello,
I finally managed to get hold of a 10.11.4 machine, and the pre-compiled
version worked ok for me.
A couple of people have suggested to me that maybe MacPorts is causing
some problem. I don't know why that might be the case, and it's not
obvious from the error message you had that this might be the case, but
that is the one thing that we know is different about your system. Do
you know how to (temporarily) turn off MacPorts? (Presumably there is
some line in your .cshrc or .bashrc file or similar which is sourcing
some MacPorts file to set up the environment, and that line could then
be commented out and a new shell then opened up.)
Wayne
On 2016-03-25 16:52, Keith Hamilton wrote:
> Hello Wayne,
>
> Thanks for the reply.
>
> I apologize, I mistyped. I am running OSX10.11.4, not OSX11.4, and I
> compiled against my macports version of python.
>
> When I attempt to run the pre-complied version it lets me open a
> spectra, but immediately after opening analysis closes, and then
> prints following:
>
> 2016-03-25 12:50:17.683 python2.7[23205:773464] *** Assertion failure
> in +[NSScreen _invalidateIfNeededForReason:],
> /Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1404.46/AppKit.subproj/NSScreen.m:1067
> 2016-03-25 12:50:17.684 python2.7[23205:773464] An uncaught exception
> was raised
> 2016-03-25 12:50:17.684 python2.7[23205:773464] NSScreen reconfig must
> only happen on the main thread.
> 2016-03-25 12:50:17.684 python2.7[23205:773464] (
> 0 CoreFoundation 0x00007fff8f3c24f2
> __exceptionPreprocess + 178
> 1 libobjc.A.dylib 0x00007fff9216df7e
> objc_exception_throw + 48
> 2 CoreFoundation 0x00007fff8f3c71ca
> +[NSException raise:format:arguments:] + 106
> 3 Foundation 0x00007fff9dfbd7d6
> -[NSAssertionHandler
> handleFailureInMethod:object:file:lineNumber:description:] + 198
> 4 AppKit 0x00007fff92c49af4 +[NSScreen
> _invalidateIfNeededForReason:] + 153
> 5 AppKit 0x00007fff92c73acc
> -[NSApplication _reactToDockChanged] + 46
> 6 AppKit 0x00007fff92c00670
> _NSCoreDockMessageReceive + 803
> 7 HIToolbox 0x00007fff965c9190
> _ZL12DockCallbackjjPvS_ + 2256
> 8 HIServices 0x00007fff92525765
> dockClientNotificationProc + 171
> 9 CoreGraphics 0x00007fff9e8e3f80
> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
> 864
> 10 CoreGraphics 0x00007fff9e8e1092
> _ZN21CGSDatagramReadStream18dispatch_datagramsEv + 1134
> 11 CoreGraphics 0x00007fff9e8e0b78
> CGSDatagramReadStreamDispatchDatagramsWithData + 271
> 12 CoreGraphics 0x00007fff9e8e09f7
> CGSSnarfAndDispatchDatagrams + 1079
> 13 CoreGraphics 0x00007fff9e8e03e2
> CGSGetNextEventRecordInternal + 84
> 14 CoreGraphics 0x00007fff9e8e02dc
> CGEventCreateNextEvent + 50
> 15 libXplugin.1.dylib 0x0000000106603e03
> ___xp_init_service_cg_event_port_block_invoke + 106
> 16 libdispatch.dylib 0x00007fff985fd40b
> _dispatch_client_callout + 8
> 17 libdispatch.dylib 0x00007fff9860d675
> _dispatch_source_latch_and_call + 2235
> 18 libdispatch.dylib 0x00007fff98601a83
> _dispatch_source_invoke + 983
> 19 libdispatch.dylib 0x00007fff98602200
> _dispatch_queue_drain + 1207
> 20 libdispatch.dylib 0x00007fff98608707
> _dispatch_queue_invoke + 549
> 21 libdispatch.dylib 0x00007fff98600d53
> _dispatch_root_queue_drain + 538
> 22 libdispatch.dylib 0x00007fff98600b00
> _dispatch_worker_thread3 + 91
> 23 libsystem_pthread.dylib 0x00007fff93eda4de
> _pthread_wqthread + 1129
> 24 libsystem_pthread.dylib 0x00007fff93ed8341
> start_wqthread + 13
> )
> 2016-03-25 12:50:17.685 python2.7[23205:773464] *** Terminating app
> due to uncaught exception 'NSInternalInconsistencyException', reason:
> 'NSScreen reconfig must only happen on the main thread.'
> *** First throw call stack:
> (
> 0 CoreFoundation 0x00007fff8f3c24f2
> __exceptionPreprocess + 178
> 1 libobjc.A.dylib 0x00007fff9216df7e
> objc_exception_throw + 48
> 2 CoreFoundation 0x00007fff8f3c71ca
> +[NSException raise:format:arguments:] + 106
> 3 Foundation 0x00007fff9dfbd7d6
> -[NSAssertionHandler
> handleFailureInMethod:object:file:lineNumber:description:] + 198
> 4 AppKit 0x00007fff92c49af4 +[NSScreen
> _invalidateIfNeededForReason:] + 153
> 5 AppKit 0x00007fff92c73acc
> -[NSApplication _reactToDockChanged] + 46
> 6 AppKit 0x00007fff92c00670
> _NSCoreDockMessageReceive + 803
> 7 HIToolbox 0x00007fff965c9190
> _ZL12DockCallbackjjPvS_ + 2256
> 8 HIServices 0x00007fff92525765
> dockClientNotificationProc + 171
> 9 CoreGraphics 0x00007fff9e8e3f80
> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
> 864
> 10 CoreGraphics 0x00007fff9e8e1092
> _ZN21CGSDatagramReadStream18dispatch_datagramsEv + 1134
> 11 CoreGraphics 0x00007fff9e8e0b78
> CGSDatagramReadStreamDispatchDatagramsWithData + 271
> 12 CoreGraphics 0x00007fff9e8e09f7
> CGSSnarfAndDispatchDatagrams + 1079
> 13 CoreGraphics 0x00007fff9e8e03e2
> CGSGetNextEventRecordInternal + 84
> 14 CoreGraphics 0x00007fff9e8e02dc
> CGEventCreateNextEvent + 50
> 15 libXplugin.1.dylib 0x0000000106603e03
> ___xp_init_service_cg_event_port_block_invoke + 106
> 16 libdispatch.dylib 0x00007fff985fd40b
> _dispatch_client_callout + 8
> 17 libdispatch.dylib 0x00007fff9860d675
> _dispatch_source_latch_and_call + 2235
> 18 libdispatch.dylib 0x00007fff98601a83
> _dispatch_source_invoke + 983
> 19 libdispatch.dylib 0x00007fff98602200
> _dispatch_queue_drain + 1207
> 20 libdispatch.dylib 0x00007fff98608707
> _dispatch_queue_invoke + 549
> 21 libdispatch.dylib 0x00007fff98600d53
> _dispatch_root_queue_drain + 538
> 22 libdispatch.dylib 0x00007fff98600b00
> _dispatch_worker_thread3 + 91
> 23 libsystem_pthread.dylib 0x00007fff93eda4de
> _pthread_wqthread + 1129
> 24 libsystem_pthread.dylib 0x00007fff93ed8341
> start_wqthread + 13
> )
> libc++abi.dylib: terminating with uncaught exception of type
> NSException
> ./bin/analysis: line 9: 23205 Abort trap: 6
> ${CCPNMR_TOP_DIR}/python2.7/bin/python2.7 -i -O
> ${CCPNMR_TOP_DIR}/ccpnmr2.4/python/ccpnmr/analysis/AnalysisGui.py $*
>
>
> Thank You
>
> Keith Hamilton
> Graduate Student
> Liang Tong Lab
> Columbia University
> New York, NY
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