Hello Mike,
If the ROI image uses all integer values, then the -K preoption in fslstats can use that image to generate results for each label. You could then use -x to output the co-ordinates of the maxima, or -C the centre-of-gravity.
Hope this helps,
Kind Regards
Matthew
> Dear FSL,
>
> I want to apply the a parcellation to individual subjects and extract coordinates for each parcellation. Each ROI in the parcellation has a different intensity value. Is it possible to use the cluster command to identify each ROI and output the coordinates for it and write it to a text file? Thanks for your help!
>
> best wishes,
> Mike
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