Hello,
It looks like FSLDIR is incorrectly set up ( as the single character 'y' ) in your shell environment. If you launch a new terminal, and type
echo $FSLDIR
what is printed?
Kind Regards
Matthew
> Dear All,
>
> I apologize if this is redundant, but I am still trying to learn and use FLICA. I am getting an error with calling some functions from MATLAB. I was testing this with just 1 file. Any suggestions and help would be greatly appreciated. Thank you.
>
> dominic
>
>
> [Y,fileinfo] = flica_load({'NCNC0501_RD.nii.gz'})
> Loading "NCNC0501_RD.nii.gz"...
> Error using call_fsl (line 40)
> FSL call (/bin/sh -c '. /home/ncnc_MEG/fsl/etc/fslconf/fsl.sh;
> FSLOUTPUTTYPE=NIFTI_PAIR; export FSLOUTPUTTYPE;
> $FSLDIR/bin/fslmaths NCNC0501_RD.nii.gz
> /tmp/tpf45efb40_7fe5_42cc_ba44_333f86571f8f') failed, /bin/sh:
> y/fsl/bin/fslmaths: No such file or directory
>
>
> Error in read_avw (line 24)
> [status,output]=call_fsl(command);
>
> Error in flica_load (line 39)
> [vol dims scales bpp endian] = read_avw(Yfiles{k});
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