Dear FSL experts,
I am trying to run PALM on a set of data saved as FreeSurfer 4D mgh
surface file but I get an error which I cannot solve. The PALM is
started from MATLAB v 2012b with the command below:
palm -n 5000 -s rawdata/surf/fA+S+M_concat_surf.mgh -o
results/palm-test.rand/fA+S+M-palm-surf -C 2.5 -T -d
designs/A6+S7+M9.mat -t designs/A6+S7+M9.con
The output from PALM:
Running PALM alpha83 using MATLAB with the following options:
-n 5000
-s rawdata/surf/fA+S+M_concat_surf.mgh
-o results/palm-test.rand/fA+S+M-palm-surf
-C 2.5
-save1-p
-fdr
-d designs/A6+S7+M9.mat
-t designs/A6+S7+M9.con
Loading surface 1/1: rawdata/surf/fA+S+M_concat_surf.mgh
Reading design matrix and contrasts.
Reference to non-existent field 'N'.
Error in palm_takeargs (line 1964)
if size(plm.Mset{m},1) ~= plm.N,
Error in palm_core (line 32)
[opts,plm] = palm_takeargs(varargin{:});
Error in palm (line 81)
palm_core(varargin{:});
Is it data or matrix related? Or is it related to wrong settings or
FreeSurfer/MATLAB/FSL version?
Thanks in advance!
Cheers
Pavel
--
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-- MUDr. Pavel Hok
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-- Laboratoř funkční magnetické rezonance
-- Neurologická klinika
-- Lékařská fakulta
-- Univerzita Palackého v Olomouci
-- Fakultní nemocnice Olomouc
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-- Laboratory of functional magnetic resonance imaging
-- Department of Neurology
-- Faculty of Medicine and Dentistry
-- Palacky University Olomouc
-- University Hospital Olomouc
-- Czech Republic
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-- I.P. Pavlova 6, 775 20 Olomouc
-- web: fmri.upol.cz
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