Hello everyone
By reading the message from the list, i learnt how to use the command lines to coregister two images so thank you in advance.
but i have a question about the coregistation
I use
x=spm_coreg(Vref,vT1)
M=inv(spm_matrix(x);
MM=spm_get_space(vT1);
spm_get_space(vT1,M*MM);
I don't want to change the voxel size of my image so i don't use the reslice command
When i do that, the two images should be coregistered
But is the transformation actually applied to the image or is the matrix just stored in the image ?
Because when i check the registration of my two images with SPM , it is OK
When i check the registration with mrview (a viewer of MRtrix for those who don't know it), it is OK
But
When i check the registration with ITKSNAP (another viewer), the image don't seem to have been coregistered at all. whereas it is OK when i use the reslice command after the coregistration.
So That is my question, does spm_get_space actually apply the transformation of the coregistration on the image ? and if not how can i do it ?
Thanks in advance
Christophe
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