Hi Paul,
it seems that you've been recompiling the MEX files yourself and some of
them are now missing. Have you followed the instructions from this webpage?
https://en.wikibooks.org/wiki/SPM/Installation_on_64bit_Mac_OS_%28Intel%29#Compilation
Alternatively download and install SPM12 again as the MEX files should
already be provided for your platform (if you had a specific reason to
recompile them, I would be curious to know more about this).
Best regards,
Guillaume.
On 12/01/16 11:48, Paul Carter wrote:
> Hi Guilaaume
>
> Many thanks for the reply.
>
> Here is what I get:
>
> ___ ____ __ __
> / __)( _ \( \/ )
> \__ \ )___/ ) ( Statistical Parametric Mapping
> (___/(__) (_/\/\_) SPM - http://www.fil.ion.ucl.ac.uk/spm/
>
> SPM is installed in: /Users/pss22d/spm12
> SPM version is SPM12 (6470, 03 Jun 15)
> SPM toolboxes: none
> MATLAB is installed in: /Applications/MATLAB_R2014a.app
> MATLAB version is 8.3.0.532 (R2014a)
> MATLAB toolboxes: signal (v6.21) images (v9.0) stats (v9.0)
> Platform: MACI64 (maxsize=281474976710655)
> OS: Mac OS X Version: 10.11.2 Build: 15C50
> Java 1.7.0_11-b21 with Oracle Corporation Java HotSpot(TM) 64-Bit Server VM mixed mode
> Java support: jvm awt swing desktop
> Monitor(s): [0 0 1920 1080] (24bit)
> OpenGL version: 2.1 INTEL-10.12.13(Hardware)
> OpenGL renderer: Intel Inc. (Intel Iris OpenGL Engine)
> MEX extension: mexmaci64
> No C compiler is selected (see mex -setup)
> C Source code permissions: dir rwxr-xr-x, file rw-r--r--
> ----------------------------------------------------------------------
> Parsing local installation... ...done
> Downloading SPM information... ...done
> Parsing SPM information... ...done
> ----------------------------------------------------------------------
> File(s) missing in your installation:
> * @file_array/private/file2mat.mexmaci64
> * @file_array/private/init.mexmaci64
> * @file_array/private/mat2file.mexmaci64
> * @xmltree/private/xml_findstr.mexmaci64
> * external/bemcp/bem_Cii_cog.mexmaci64
> * external/bemcp/bem_Cii_cst.mexmaci64
> * external/bemcp/bem_Cii_lin.mexmaci64
> * external/bemcp/bem_Cij_cog.mexmaci64
> * external/bemcp/bem_Cij_cst.mexmaci64
> * external/bemcp/bem_Cij_lin.mexmaci64
> * external/bemcp/bem_Gi_cog.mexmaci64
> * external/bemcp/bem_Gi_vert.mexmaci64
> * [log in to unmask]
> * [log in to unmask]
> * [log in to unmask]
> * [log in to unmask]
> * [log in to unmask]
> * [log in to unmask]
> * [log in to unmask]
> * toolbox/FieldMap/pm_create_connectogram_dtj.mexmaci64
> * toolbox/FieldMap/pm_estimate_ramp.mexmaci64
> * toolbox/FieldMap/pm_ff_unwrap.mexmaci64
> * toolbox/FieldMap/pm_invert_phasemap_dtj.mexmaci64
> * toolbox/FieldMap/pm_merge_regions.mexmaci64
> * toolbox/FieldMap/pm_pad.mexmaci64
> * toolbox/FieldMap/pm_restore_ramp.mexmaci64
> * toolbox/FieldMap/pm_smooth_phasemap_dtj.mexmaci64
> ----------------------------------------------------------------------
> File(s) not part of the current version of SPM:
> * src/spm_2015Sep02.ps
> * src/spm_vol_utils.o
> ----------------------------------------------------------------------
> No local change or out-of-date files
> ----------------------------------------------------------------------
>
>
>
> Regards
>
> Paul
>
>
>
> On 11/01/2016, 19:31, "Guillaume Flandin" <[log in to unmask]> wrote:
>
>> Hi Paul.
>>
>> can you type the following at the MATLAB prompt and let us know what you
>> get:
>>
>>>> spm_check_installation full
>>
>> Many thanks,
>> Guillaume.
>>
>>
>> On 11/01/16 12:43, Paul Carter wrote:
>>> Hi all
>>>
>>> I am consistently unable to get past the reslicing stage for a set of data I am working on.
>>>
>>> MacMini, OS10.11.12, Matlab_R2014a, SPM12
>>>
>>> Any help would really be appreciated.
>>>
>>> Paul Carter
>>>
>>> This is the error I am getting:
>>>
>>> SPM12: spm_reslice (v5929) 12:35:43 - 11/01/2016
>>> ========================================================================
>>> Failed 'Realign: Estimate & Reslice'
>>> Error using mat2file (line 16)
>>> mat2file.c not compiled - see Makefile
>>> In file "[log in to unmask]" (v1530), function "mat2file" at line 16.
>>> In file "[log in to unmask]" (v6157), function "subfun" at line 158.
>>> In file "[log in to unmask]" (v6157), function "subsasgn" at line 85.
>>> In file "/Users/pss22d/spm12/spm_write_plane.m" (v6079), function "spm_write_plane" at line 31.
>>> In file "/Users/pss22d/spm12/spm_write_vol.m" (v5731), function "spm_write_vol" at line 84.
>>> In file "/Users/pss22d/spm12/spm_reslice.m" (v5929), function "reslice_images" at line 244.
>>> In file "/Users/pss22d/spm12/spm_reslice.m" (v5929), function "spm_reslice" at line 133.
>>> In file "/Users/pss22d/spm12/config/spm_run_realign.m" (v5653), function "spm_run_realign" at line 44.
>>>
>>> The following modules did not run:
>>> Failed: Realign: Estimate & Reslice
>>>
>>>
>>>
>>> Rhif Elusen Gofrestredig 1141565 - Registered Charity No. 1141565
>>>
>>> Gall y neges e-bost hon, ac unrhyw atodiadau a anfonwyd gyda hi, gynnwys deunydd cyfrinachol ac wedi eu bwriadu i'w defnyddio'n unig gan y sawl y cawsant eu cyfeirio ato (atynt). Os ydych wedi derbyn y neges e-bost hon trwy gamgymeriad, rhowch wybod i'r anfonwr ar unwaith a dilewch y neges. Os na fwriadwyd anfon y neges atoch chi, rhaid i chi beidio a defnyddio, cadw neu ddatgelu unrhyw wybodaeth a gynhwysir ynddi. Mae unrhyw farn neu safbwynt yn eiddo i'r sawl a'i hanfonodd yn unig ac nid yw o anghenraid yn cynrychioli barn Prifysgol Bangor. Nid yw Prifysgol Bangor yn gwarantu bod y neges e-bost hon neu unrhyw atodiadau yn rhydd rhag firysau neu 100% yn ddiogel. Oni bai fod hyn wedi ei ddatgan yn uniongyrchol yn nhestun yr e-bost, nid bwriad y neges e-bost hon yw ffurfio contract rhwymol - mae rhestr o lofnodwyr awdurdodedig ar gael o Swyddfa Cyllid Prifysgol Bangor.
>>>
>>> This email and any attachments may contain confidential material and is solely for the use of the intended recipient(s). If you have received this email in error, please notify the sender immediately and delete this email. If you are not the intended recipient(s), you must not use, retain or disclose any information contained in this email. Any views or opinions are solely those of the sender and do not necessarily represent those of Bangor University. Bangor University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of the text of the email, this email is not intended to form a binding contract - a list of authorised signatories is available from the Bangor University Finance Office.
>>>
>>
>> --
>> Guillaume Flandin, PhD
>> Wellcome Trust Centre for Neuroimaging
>> University College London
>> 12 Queen Square
>> London WC1N 3BG
>
>
> Rhif Elusen Gofrestredig 1141565 - Registered Charity No. 1141565
>
> Gall y neges e-bost hon, ac unrhyw atodiadau a anfonwyd gyda hi, gynnwys deunydd cyfrinachol ac wedi eu bwriadu i'w defnyddio'n unig gan y sawl y cawsant eu cyfeirio ato (atynt). Os ydych wedi derbyn y neges e-bost hon trwy gamgymeriad, rhowch wybod i'r anfonwr ar unwaith a dilewch y neges. Os na fwriadwyd anfon y neges atoch chi, rhaid i chi beidio a defnyddio, cadw neu ddatgelu unrhyw wybodaeth a gynhwysir ynddi. Mae unrhyw farn neu safbwynt yn eiddo i'r sawl a'i hanfonodd yn unig ac nid yw o anghenraid yn cynrychioli barn Prifysgol Bangor. Nid yw Prifysgol Bangor yn gwarantu bod y neges e-bost hon neu unrhyw atodiadau yn rhydd rhag firysau neu 100% yn ddiogel. Oni bai fod hyn wedi ei ddatgan yn uniongyrchol yn nhestun yr e-bost, nid bwriad y neges e-bost hon yw ffurfio contract rhwymol - mae rhestr o lofnodwyr awdurdodedig ar gael o Swyddfa Cyllid Prifysgol Bangor.
>
> This email and any attachments may contain confidential material and is solely for the use of the intended recipient(s). If you have received this email in error, please notify the sender immediately and delete this email. If you are not the intended recipient(s), you must not use, retain or disclose any information contained in this email. Any views or opinions are solely those of the sender and do not necessarily represent those of Bangor University. Bangor University does not guarantee that this email or any attachments are free from viruses or 100% secure. Unless expressly stated in the body of the text of the email, this email is not intended to form a binding contract - a list of authorised signatories is available from the Bangor University Finance Office.
>
--
Guillaume Flandin, PhD
Wellcome Trust Centre for Neuroimaging
University College London
12 Queen Square
London WC1N 3BG
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