Dear Maria,
>
> how can one correct a series of DWIs for motion artifacts when not having interleaved B0s for the eddy algorithm? mcflirt does not seem to correct the DWIs, except for the B0 images. i'd like to register then in their native space.
having interleaved b0s is a good idea, but is not necessary for eddy. If you try it I think you will get good results even without.
Jesper
>
> Thank you.
>
> Best,
> --
> Maria
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