Hi Rosalia,
Running fslreorient2std on your original images before using SIENAX often solves such problems, so unless you have used that already it is probably worth a try!
Best,
Eelke
> On 14 Jan 2016, at 18:50, Rosalia Dacosta Aguayo <[log in to unmask]> wrote:
>
> Dear FSL experts,
>
> One of my problematic images...even after running SIENAX...gave me this result...how I can cop with this?
>
> Thanks,
>
> Rosalia.
> <I2std.png>
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