Dear Mathieu,
looks like your toolbox is not recognized on your system. Try the following at your matlab command line:
A = ver;
for i=1:length(A)
if strcmp(A(i).Name,'Voxel Based Morphometry Toolbox')
r_vbm = A(i).Version
end
end
if it's not giving any output for the r_vbm variable there should be some installation issue. You can try to set the variable manually to some value
r_vbm='435'
before the faulty line and test whether VBM is running at all...
Best,
Christian
On Tue, 15 Dec 2015 22:20:18 +0100, Mathieu Dubois <[log in to unmask]> wrote:
>Hello,
>
>Following the I have compiled SPM 8 (ver. 6313) and VBM 8 (ver. 435)
>with Matlab 2010a (same version that is used at UCL).
>
>In order to test, I tried to segment a simple T1 image. After writing
>the warped images, the code fails with the following error:
>Failed 'VBM8: Estimate & Write'
>Undefined function or variable "r_vbm".
>In file
>"/home_local/mdiallo/spm_exec/spm8_mcr/Code/matlab/spm8_updates_r6313/to
>olbox/vbm8/cg_vbm8_write.m" (???), function "cg_vbm8_write" at line 965.
>In file
>"/home_local/mdiallo/spm_exec/spm8_mcr/Code/matlab/spm8_updates_r6313/to
>olbox/vbm8/cg_vbm8_run.m" (???), function "run_job" at line 248.
>In file
>"/home_local/mdiallo/spm_exec/spm8_mcr/Code/matlab/spm8_updates_r6313/toolbox/vbm8/cg_vbm8_run.m"
>(???), function "cg_vbm8_run" at line 96.
>The following modules did not run:
>Failed: VBM8: Estimate & Write
>
>Looking at the source code, the faulty line is.
> str = [str struct('name', 'Versions
>Matlab/SPM8/VBM8:','value',sprintf('%s / %s / %s',r_matlab,r_spm,r_vbm))];
>The "r_vbm" variable is defined just above:
> A = ver;
> for i=1:length(A)
> if strcmp(A(i).Name,'Voxel Based Morphometry Toolbox')
> r_vbm = A(i).Version;
> end
> if strcmp(A(i).Name,'Statistical Parametric Mapping')
> r_spm = A(i).Version;
> end
> if strcmp(A(i).Name,'MATLAB')
> r_matlab = A(i).Version;
> end
> end
>The code seems correct (test on Matlab with non-compiled SPM+VBM). As
>Matlab doesn't complain about the "r_matlab" and "r_spm" variables, I
>guess they are correctly detected in the compiled version.
>
>Any clue?
>
>Mathieu
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