Hello FSL experts,
I am trying to run Fix with the command:
/Applications/fix1.06/fix RestingState.ica /Applications/fix1.06/training_files/Standard.RData 20 -m
but when running I get the following errors:
/Applications/MATLAB_R2014b.app/bin not found!
/Applications/fix1.06/call_matlab.sh [-z <mode>] [-o <options>] [-p <path>] [-h <fix path>]
[-c <mcr path>] [-b <binaries path>] [-l <logfile>]
{-r <"MATLAB code">|-m <script>|-f <function> [arguments...]}
-z <mode>: This overrides the environment variable
FSL_FIX_MATLAB_MODE which would otherwise control this.
0 = Use compiled MATLAB function specified by
-m <function name>
1 = Use MATLAB - requires -r or -m option
2 = Use Octave - requires -r or -m option
-r <"MATLAB code">: Evaluate the double-quoted MATLAB/Octave
code. Equivalent to 'matlab -r "MATLAB code"' or
'octave --eval "MATLAB code"'
Ensure that any double quotes in this string are escaped
with '\'.
-m <script>:
-z = 0 or not provided, run as -z = 1
-z = 1|2 - Run <script> in MATLAB/Octave
Equivalent to 'matlab \< <script>.m' or 'octave <script>.m'
-f <function> [arguments]:
-z = 0 - Call compiled MATLAB <function>
Arguments to be passed are given in the remainder of the
command line.
-z = 1|2 - Run <function> script in MATLAB/Octave
Equivalent to 'matlab -r "<function>([arguments])"' or
'octave --eval "<function>([arguments])"'
Arguments to be passed are given in the remainder of the
command line.
-o <options>: Double quoted list of MATLAB/Octave command line
options. Defaults to ${FSL_FIX_MLOPTS} or ${FSL_FIX_OCOPTS}
respectively
-p <path>: Path to MATLAB/Octave startup script/binary.
Defaults to: ${FSL_FIX_MATLAB} or ${FSL_FIX_OCTAVE}
respectively
-h <path>: Path to folder containing the Fix programs
-w <path>: Path to FSL MATLAB helper functions, defaults to
/usr/local/fsl/etc/matlab
-c <mcr path>: Path to MATLAB Compiler Runtime for the version
of MATLAB Fix was compiled under. Defaults to ${FSL_FIX_MCRROOT}
-b <compiled path>: Path to the folder containing the compiled MATLAB
functions. Defaults to ${FSL_FIX_MLCDIR}
-l <logfile>: Append console and error output to <logfile>\n
FIX Classifying components in Melodic directory: RestingState.ica using training file: /Applications/fix1.06/training_files/Standard.RData and threshold 20
FIX features not already generated, so creating them now.
FIX Feature extraction for Melodic output directory: RestingState.ica
create edge masks
run FAST
registration of standard space masks
extract features
/Applications/MATLAB_R2014b.app/bin not found!
/Applications/fix1.06/call_matlab.sh [-z <mode>] [-o <options>] [-p <path>] [-h <fix path>]
[-c <mcr path>] [-b <binaries path>] [-l <logfile>]
{-r <"MATLAB code">|-m <script>|-f <function> [arguments...]}
-z <mode>: This overrides the environment variable
FSL_FIX_MATLAB_MODE which would otherwise control this.
0 = Use compiled MATLAB function specified by
-m <function name>
1 = Use MATLAB - requires -r or -m option
2 = Use Octave - requires -r or -m option
-r <"MATLAB code">: Evaluate the double-quoted MATLAB/Octave
code. Equivalent to 'matlab -r "MATLAB code"' or
'octave --eval "MATLAB code"'
Ensure that any double quotes in this string are escaped
with '\'.
-m <script>:
-z = 0 or not provided, run as -z = 1
-z = 1|2 - Run <script> in MATLAB/Octave
Equivalent to 'matlab \< <script>.m' or 'octave <script>.m'
-f <function> [arguments]:
-z = 0 - Call compiled MATLAB <function>
Arguments to be passed are given in the remainder of the
command line.
-z = 1|2 - Run <function> script in MATLAB/Octave
Equivalent to 'matlab -r "<function>([arguments])"' or
'octave --eval "<function>([arguments])"'
Arguments to be passed are given in the remainder of the
command line.
-o <options>: Double quoted list of MATLAB/Octave command line
options. Defaults to ${FSL_FIX_MLOPTS} or ${FSL_FIX_OCOPTS}
respectively
-p <path>: Path to MATLAB/Octave startup script/binary.
Defaults to: ${FSL_FIX_MATLAB} or ${FSL_FIX_OCTAVE}
respectively
-h <path>: Path to folder containing the Fix programs
-w <path>: Path to FSL MATLAB helper functions, defaults to
/usr/local/fsl/etc/matlab
-c <mcr path>: Path to MATLAB Compiler Runtime for the version
of MATLAB Fix was compiled under. Defaults to ${FSL_FIX_MCRROOT}
-b <compiled path>: Path to the folder containing the compiled MATLAB
functions. Defaults to ${FSL_FIX_MLCDIR}
-l <logfile>: Append console and error output to <logfile>\n
/Applications/fix1.06/fix: line 252: R: command not found
No valid labelling file specified
Could anyone please suggest a way to resolve this?
Thanks in advance.
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