Hello experts!
I have a participant whose data was collected as if the patient were in prone rather than supine position in the scanner, and it effectively looks as though this person's brain is 'upside-down'. I have been attempted an AP/PA switch on this data using the fslswapdim command, and I have not been successful in "righting" the brain. Any tips on what I might be doing wrong? Here are the commands I have attempted.
fslswapdim anat.nii.gz RL PA SI anat-swap.nii.gz
fslswapdim anat.nii.gz RL PA SI anat-swap.nii.gz
Thanks so much!
Marika
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