Dear FSL experts,
I just started BEDPOSTX from command line on a mashine running Debian
and FSL 5.0.7. The script starts normally, but shortly afterwards
warnings appear regularly:
Executing: bedpostx /data/projects/4speech_neurochir/fdt/s08/01-20140509/dti
subjectdir is /data/projects/4speech_neurochir/fdt/s08/01-20140509/dti
Making bedpostx directory structure
Queuing preprocessing stages
Queuing parallel processing stage
----- Bedpostx Monitor -----
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
/data/projects/4speech_neurochir/fdt/s08/01-20140509/dti.bedpostX/monitor:
39: [: x: unexpected operator
...
and so on...
The bedpostX seems to be running normally (is not finished yet) and I
suspect the warnings won't affect the data since I located the
possible source in the monitor script:
39: if [ "x" == "x" ]; then
40: havedad=`ps -e -o pid | grep "15516\b" | wc -l`
41: fi
42: sleep 180;
The if statement does not seem to work properly when started with
#!/bin/sh, the same statement works without complaints under
/bin/bash, although I am not sure what is it good for. I also noticed,
that the monitor script changed dramatically from the previous
versions, so that might be the source of problems...
Cheers
Pavel
--
-------------------------------------------------------------------------------
-- MUDr. Pavel Hok
-------------------------------------------------------------------------------
-- Laboratoř funkční magnetické rezonance
-- Neurologická klinika
-- Lékařská fakulta
-- Univerzita Palackého v Olomouci
-- Fakultní nemocnice Olomouc
-------------------------------------------------------------------------------
-- Laboratory of functional magnetic resonance imaging
-- Department of Neurology
-- Faculty of Medicine and Dentistry
-- Palacky University Olomouc
-- University Hospital Olomouc
-- Czech Republic
-------------------------------------------------------------------------------
-- I.P. Pavlova 6, 775 20 Olomouc
-- web: fmri.upol.cz
-- tel.: +420 588 443 418
-- e-mail: [log in to unmask]
-------------------------------------------------------------------------------
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