Thanks for your reply!
But can you tell me if a brain extraction as shown in the attachments could be a problem regarding further analysis anyway (creating FA images, TBSS, ROI extraction)? For our project I have to use the MNI template and also preprocessed most of the data (usually without masking problems), so it would be great if it was not absolutely necessary to start the whole procedure again just because of a few inaccurate brain extractions.
Best regards
Lukas
|