Dear Xuehui,
Try running aria2.3 with python >= 2.5 (best is to use the same python
as ccpnmr)
Regards,
Benjamin
On 10/22/15 9:55 AM, Xue Liu wrote:
> Hello,
> I could not get aria2.3 work with ccpnmr anymore which was fine months ago.
> Since I haven't been using the aria for a while, the only thing I remembered is that I upgraded the ccpnmr someday. I did whatever I could and still could not get aria2.3 to work. I've noticed that while ccpnmr2.4.1 use python2.6, 2.4.2 is using python2.7 now. Could this be the cause of the problem? Or should I download the whole 2.4.2 package rather than upgrade from 2.4.1? Thank you very much for any advice!
>
> Here is the error:
> Loading project "run.xml"...
> MESSAGE [Project]: Temporary directory has been set to /home/xhliu/Data/
> Projects/mry_N2_20151022/aria_temp.tmpgVhg0Y1445500714
> MESSAGE [Project]: List of available machines is empty. Running calculations on
> localhost "localhost.localdomain", assuming 1 CPU. Using /
> usr/bin/cns as structure engine.
> MESSAGE [Project]: Checking host list ...
> MESSAGE [Job manager]: Command "csh -f" ... ok.
> MESSAGE [Project]: Cache is disabled.
> Model read finished. Duration 2.40438103676
> Model validity check skipped
> MESSAGE [Project]: ------------ Reading data from CCPN data model ------------
> MESSAGE [Project]: Opening CCPN data model "/home/xhliu/Data/Projects/
> mry_N2_20151022"...
> MESSAGE [Project]: CCPN data model opened.
> MESSAGE [Project]: Retrieving molecular system "MS1", chain code(s) "A"...
> MESSAGE [Project]: Retrieving peak list "(project=defaultProject, experiment=2,
> data_source=1, serial=1)", shift list "1" ...
> Traceback (most recent call last):
> File "/home/xhliu/programs/aria2.3/aria2.py", line 903, in ?
> verbose_level, use_condor=condor)
> File "/home/xhliu/programs/aria2.3/aria2.py", line 811, in run_aria
> project.load_and_preprocess_data()
> File "/home/xhliu/programs/aria2.3/src/py/aria/Project.py", line 1426, in load_and_preprocess_data
> self.read_data()
> File "/home/xhliu/programs/aria2.3/src/py/aria/Project.py", line 1186, in read_data
> self.read_ccpn_data()
> File "/home/xhliu/programs/aria2.3/src/py/aria/Project.py", line 709, in read_ccpn_data
> from aria.exportToCcpn import getAriaRun
> File "/home/xhliu/programs/aria2.3/src/py/aria/exportToCcpn.py", line 1, in ?
> from ccpnmr.analysis.core.ConstraintBasic import makeNmrConstraintStore, makeStructureGeneration, getFixedResonance
> File "/home/xhliu/programs/ccpnmr/ccpnmr2.4/python/ccpnmr/analysis/core/ConstraintBasic.py", line 1637
> minFreq = expDimRef.minAliasedFreq if expDimRef.minAliasedFreq is not None else valRange[0]
> ^
> SyntaxError: invalid syntax
>
>
> Best,
>
> Xuehui
>
--
---------------------------------------------
Dr Benjamin Bardiaux [log in to unmask]
Unité de Bioinformatique Structurale
CNRS UMR3528 - Institut Pasteur
25,28 rue du Docteur Roux 75015 Paris, France
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