Hello,
I could not get aria2.3 work with ccpnmr anymore which was fine months ago.
Since I haven't been using the aria for a while, the only thing I remembered is that I upgraded the ccpnmr someday. I did whatever I could and still could not get aria2.3 to work. I've noticed that while ccpnmr2.4.1 use python2.6, 2.4.2 is using python2.7 now. Could this be the cause of the problem? Or should I download the whole 2.4.2 package rather than upgrade from 2.4.1? Thank you very much for any advice!
Here is the error:
Loading project "run.xml"...
MESSAGE [Project]: Temporary directory has been set to /home/xhliu/Data/
Projects/mry_N2_20151022/aria_temp.tmpgVhg0Y1445500714
MESSAGE [Project]: List of available machines is empty. Running calculations on
localhost "localhost.localdomain", assuming 1 CPU. Using /
usr/bin/cns as structure engine.
MESSAGE [Project]: Checking host list ...
MESSAGE [Job manager]: Command "csh -f" ... ok.
MESSAGE [Project]: Cache is disabled.
Model read finished. Duration 2.40438103676
Model validity check skipped
MESSAGE [Project]: ------------ Reading data from CCPN data model ------------
MESSAGE [Project]: Opening CCPN data model "/home/xhliu/Data/Projects/
mry_N2_20151022"...
MESSAGE [Project]: CCPN data model opened.
MESSAGE [Project]: Retrieving molecular system "MS1", chain code(s) "A"...
MESSAGE [Project]: Retrieving peak list "(project=defaultProject, experiment=2,
data_source=1, serial=1)", shift list "1" ...
Traceback (most recent call last):
File "/home/xhliu/programs/aria2.3/aria2.py", line 903, in ?
verbose_level, use_condor=condor)
File "/home/xhliu/programs/aria2.3/aria2.py", line 811, in run_aria
project.load_and_preprocess_data()
File "/home/xhliu/programs/aria2.3/src/py/aria/Project.py", line 1426, in load_and_preprocess_data
self.read_data()
File "/home/xhliu/programs/aria2.3/src/py/aria/Project.py", line 1186, in read_data
self.read_ccpn_data()
File "/home/xhliu/programs/aria2.3/src/py/aria/Project.py", line 709, in read_ccpn_data
from aria.exportToCcpn import getAriaRun
File "/home/xhliu/programs/aria2.3/src/py/aria/exportToCcpn.py", line 1, in ?
from ccpnmr.analysis.core.ConstraintBasic import makeNmrConstraintStore, makeStructureGeneration, getFixedResonance
File "/home/xhliu/programs/ccpnmr/ccpnmr2.4/python/ccpnmr/analysis/core/ConstraintBasic.py", line 1637
minFreq = expDimRef.minAliasedFreq if expDimRef.minAliasedFreq is not None else valRange[0]
^
SyntaxError: invalid syntax
Best,
Xuehui
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