Hi,
in the first case, you may want to try fslreorient2std first.
The second looks like z-shift of the fieldmap magnitude to highres. You
need to fix that.
Cheers,
Andreas
Am 18.09.15 16:58 schrieb "FSL - FMRIB's Software Library on behalf of
Jennifer Robinson" unter <[log in to unmask] on behalf of
[log in to unmask]>:
>I just realized that my message came through as an attachment instead of
>a regular post:
>Hello!
>I've been working toward getting our fieldmaps to cooperate in FEAT,
>without much luck. In most cases, the data register poorly and warp
>substantially. I'm not entirely sure whats going wrong, and was hoping
>that perhaps posting here could help me over this bump.
>
>I've uploaded two examples to my Dropbox (the zip file contains the 2
>directories, plus the original files used for the analyses):
>https://www.dropbox.com/s/amgx57x4dzsrwfy/JLR-FSL-DATA.zip?dl=0
>
>Here are two screenshots showing the types of problems I'm having:
>http://aucanlab.com/wp-content/uploads/2015/09/Image1.png
>http://aucanlab.com/wp-content/uploads/2015/09/Image2.png
>
>I appreciate any insight you could provide!
>Kind regards,
>Jenny
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