Hi,
You can use the attached scripts which add a -P option to specify the
brain and skull images.
On Tue, Sep 1, 2015 at 5:58 AM, Jeroen Siero <[log in to unmask]> wrote:
> Hi there,
>
> I had to manually fix my brain masks on T1w MPRAGE scans, therefore I'd like omit the BET step when running sienas/sienax. What is the best way to do this?
>
> Thanks,
>
> Jeroen Siero
--
Niels Bergsland
Integration Director
Buffalo Neuroimaging Analysis Center
100 High St. Buffalo NY 14203
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