Hi
I'm trying to use the 'Batch' function in SPM 12 to automate the preprocessing of some MR data. When preprocessing I use the Segment function and select 'Save Bias Corrected' and set 'Deformation Fields' as 'Forward'. When the Segment job is run this produces a version of the anatomical NII file prefixed 'y_'. I then use this 'y_' file as the Deformation Field in the Normalise: Write step.
When creating the batch job, I want to know what dependency selection I should use for the Deformation Field option of Normalise: Write so as to ensure it is this 'y_' file that is used during normalisation? There is the option for 'Segment: Forward Deformations' - does that refer to the 'y_' file? The other options are 'Segment: cX Images' and 'Segment: Bias Corrected (1)'.
Thanks
Rob
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