Thank you for the insight.
Additionally, I had to removed the spaces between the X, Y, Z coordinates
(i.e., -c X,Y,Z) in order for atlasquery to output the correct regions...
FYI, it will output regions with spaces, but they will not be correct.
> Hi,
> atlasquery takes mm coordinates.
>
> On Sunday, August 23, 2015, [log in to unmask] <
> [log in to unmask]> wrote:
>
>> Hello FSL experts,
>>
>> I seem to be having an issue with atlasquery outputting incorrect region
>> definitions when I enter the X Y Z coordinates outputted by the cluster
>> command or taken from FSLview.
>>
>> For example, when I enter the X Y Z coordinates 40 56 40 into FSLview
>> and
>> look at the Harvard-Oxford Subcortical Structural Atlas output, I
>> receive
>> the following: 100% Right Thalamus
>>
>> If I use the same coordinates with atlasquery, I sometimes receive "no
>> label found" and other times I receive "<b>Harvard-Oxford Subcortical
>> Structural Atlas</b><br>91% Right Cerebral Cortex , 7% Right Cerebral
>> White Matter"
>>
>> Here is the exact command I am using:
>> atlasquery -a "Harvard-Oxford Subcortical Structural Atlas" -c 40, 56,
>> 40
>>
>> Please let me know if I can provide any additional information.
>>
>> Thank you for the help!
>>
>> Jacob
>>
>>
>>
>>
>>
>>
>>
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>
>
> --
> Niels Bergsland
> Integration Director
> Buffalo Neuroimaging Analysis Center
> 100 High St. Buffalo NY 14203
> [log in to unmask]
>
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