Hello FSL experts
I have been running tbss on rodent data and finished running statistics in PALM. I have a follow up analysis question. Im curious about running an ROI analysis within the hippocampus but no hippocampus voxels appear in the mean_FA_skeletonised. Would it be acceptable to run the all_FA image through PALM with a hippocampus mask created assuming the initial non-linear registration is sufficiently correct in tbss_2_reg? If not are there any suggestions as to an acceptable voxelwise analysis of just the hippocampus?
Patrick
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