Reply-To: | | [log in to unmask][log in to unmask]> wrote: >>> >>> Hi, >>> >>> I'm processing one subject's data now. Realignment is ok, then slice >>> timing is ok, but coregistration (reference image: mean EPI images; source >>> image: subject's T1 images) has problem (I noticed errors during >>> normalization because it said "there is not enough overlap in the images to >>> obtain a solution. Please check that your header information is OK. The >>> Check Reg utility will show you the initial alignment between the images, >>> which must be within about 4cm and about 15 degrees in order for SPM to >>> find an optimal solution"). In Check Reg, I select both mean EPI images and >>> subject's T1 images, and I found that mean EPI images are intact but a >>> large proportion of subject's T1 images are missing or misaligned. However, >>> I check subject's T1 images and they look intact. My preprocessing pipeline >>> works fine for all subjects except this one. I repeat coregistration in >>> this subject but it shows the same errors. >>> >>> So how can I perform coregistration in this subject, and the perform >>> subsequent normalization and smoothing? (In my pipeline, I register >>> subject's T1 images to their EPI, then I normalize this T1 to template T1 >>> and, based on the output sn.mat file, I normalize EPI to standard space) >>> >>> Thanks. >>> >>> Mike > > ------------------------------ > > Date: Thu, 2 Jul 2015 19:50:27 +0000 > From: éòì åééñ <[log in to unmask]> > Subject: Re: SPM12- Data visualization > > Were can I find FIVE? > The link is under construction > > On Thu, Jul 2, 2015 at 10:12 AM MCLAREN, Donald <[log in to unmask]> > wrote: > >> I'm not sure how to do it SPM12, but FIVE (mrtools.mgh.harvard.edu) has a >> render function and can handle multiple overlays. >> >> Best Regards, Donald McLaren >> ================= >> D.G. McLaren, Ph.D. >> Research Fellow, Department of Neurology, Massachusetts General Hospital >> and >> Harvard Medical School >> Postdoctoral Research Fellow, GRECC, Bedford VA >> Website: http://www.martinos.org/~mclaren >> Office: (773) 406-2464 >> ===================== >> This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED >> HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is >> intended only for the use of the individual or entity named above. If the >> reader of the e-mail is not the intended recipient or the employee or agent >> responsible for delivering it to the intended recipient, you are hereby >> notified that you are in possession of confidential and privileged >> information. Any unauthorized use, disclosure, copyinM¨ëœ |