Hi Anderson,
I did not use the option "-noranktest". I am sorry about sharing the data. I cannot do that because of strict confidentiality policies of research data at our center.
I have completed the analyses using the following parameters (see below) and there is still some problem with FWE corrected output (all of them are binary skeleton mask ).
-i all_FA_skeletonised_52pairs.nii
-i all_MO_skeletonised_52pairs.nii
-i all_L1_skeletonised_52pairs.nii
-i all_L2L3_skeletonised_52pairs.nii
-i all_MTR_skeletonised_52pairs.nii
-m mean_FA_skeleton_mask.nii
-d design.mat
-t design.con
-f design.fts
-n 5000
-mv
-tfce2D
-o tfce
i.e all tfce_vox_tstat_fwep_m*_c* and tfce_vox_mv_hotellingtsq_fwep_c* output files are binary skeleton images (all voxels of the skeleton have a value of 1).
Thank you
Jay
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