I didn't understand what the original question was asking, but (FWIW) if
you want to do lsq matching using given atom pairs, you can do that in
Coot using add-lsq-atom-pair.
Paul
On 16/07/15 12:00, Tim Gruene wrote:
> Dear Cedric,
>
> lsqman from the USF takes individial atom names as input to be
> superimposed. That may be what you need.
>
> Best,
> Tim
>
> On 07/16/2015 12:18 PM, cedric bauvois wrote:
>> Dear all,
>>
>> What is the best way to superimpose a small organic molecule on a small
>> protein fragment ?
>>
>> Which software can be used to do so ?
>>
>> Thank you for your helpfull suggestions
>>
>> Cedric
>>
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