Dear Kulpreet Cheema,
since you did not attach your batch job, it is difficult to guess what you were trying to do and went wrong. As the error message suggests, the number of flow fields did not match the number of images to normalise using "Normalise to MNI space". You would want to use the "Many subjects" option in for "Normalise to MNI space". Then, you would enter the DARTEL created flow fields as a dependency for "Flow Fields". For each set of images to normalise, you would then add a new "Images" item and select files for each subject or use a dependency for e.g. c1 or c2 images. Each images item should contain exactly one image per subject in the order of the DARTEL flow fields.
Hope this helps,
Volkmar
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