Helmet,
There is the vbm12!
Dana
Sent from my iPhone
> On Jun 18, 2015, at 11:39 AM, Christian Gaser <[log in to unmask]> wrote:
>
> Dear Marieke,
>
> as already pointed out VBM12 is still in development. Please update to the newest version via the update function or download the newest version here:
> http://www.neuro.uni-jena.de/vbm12
>
> Best,
>
> Christian
>
>> On Wed, 17 Jun 2015 16:15:33 +0100, Marieke <[log in to unmask]> wrote:
>>
>> Hi, I've been using VBM12:Segmentation, which worked fine before, but now it gives an error. I was wondering whether something has changed in the code since the last update?
>>
>> Specifically, in the step segmentation, modulated normalized, you can choose between 1) affine and non-linear (produces mwp* images) and 2) non-linear only (produces mw0* images). If you choose non-liner only, it works fine, but if you choose affine&non-linear it gives the error shown below. It seems that the function vbm_io_writenii skips defining 'wr' when the option is set to 1?
>>
>> Hope you can help out,
>>
>> Best Marieke
>>
>> ------------------------------------------------------------------------
>> Running job #1
>> ------------------------------------------------------------------------
>> Running 'VBM12: Segmentation'
>>
>> ------------------------------------------------------------------------
>> VBM12 r684: ./VBM/T1_sub001.nii,1
>> ------------------------------------------------------------------------
>> NLM-Filter: 290s
>> Affine Registration: 126s
>> SPM-Preprocessing 1: 226s
>> SPM-Preprocessing 2: 186s
>> Global Intensity Correction: 61s
>> NLM-Filter after Global Intensity Correction (ORNLMstr=0.03): 24s
>> Local Adaptive Segmentation (LASstr=0.50): 174s
>> ROI Segmentation (Partitioning): 107s
>> Blood Vessel Correction (BVCstr=0.50): 5s
>> Skull-stripping using graph-cut (gcutstr=0.50): 34s
>> Amap without Kmeans with MRF-Filterstrength 0.15: 29s
>> Final cleanup (gcutstr=0.50): 25s
>> Dartel normalization: 480s
>> Write result maps:
>> ------------------------------------------------------------------------
>> VBM Preprocessing error: MATLAB:UndefinedFunction: ./VBM/T1_sub001.nii,1
>> ------------------------------------------------------------------------
>> Undefined function or variable "wr".
>> ------------------------------------------------------------------------
>> 259 - vbm_io_writenii
>> 1407 - cg_vbm_write
>> 326 - cg_vbm_run_job
>> 10 - cg_vbm_run_newcatch
>> 162 - run_job
>> 121 - cg_vbm_run
>> 29 - cfg_run_cm
>> 1673 - local_runcj
>> 953 - cfg_util
>> 707 - MenuFileRun_Callback
>> 96 - gui_mainfcn
>> 53 - cfg_ui
>> ------------------------------------------------------------------------
>> Done 'VBM12: Segmentation'
>> Done
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