Dear Frederic,
there are two different ways how toolboxes integrate in SPM. If the toolbox has a GUI, this will be usually accessible from the "Toolbox" dropdown in the "Menu" window. If the toolbox provides data analysis methods, they will be available from the "SPM->Tools" menu in the batch editor. Some toolboxes provide both a GUI and batch modules, while others only use one of the two integration options.
Hope this helps,
Volkmar
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