Hi Jan - yes, that is true, of course - but when you have 1000+ residues the plot gets rather crowded and this becomes not as practical.
Cheers,
Oliver.
On Wed, 27 May 2015 10:54:55 +0200, Jan Stransky <[log in to unmask]> wrote:
>You can already click on residue symbols in Coot's Ramachandran, which
>will focus you on that residue... A table you can get from Molprobity
>webservice, but it is not clickable though...
>Cheers,
>Jan
>
>On 05/25/2015 06:22 PM, Shane Caldwell wrote:
>> If I might add as well to Oliver's suggestions, an option to jump to
>> questionable/bad ramachandrans would be useful at the validation
>> stage. A list like the residues with missing atoms / residues with alt
>> confs functions would be a quick way to inspect these without having
>> to track them down in a busy 2d plot.
>>
>> Shane Caldwell
>> McGill University
>>
>> On Mon, May 25, 2015 at 11:05 AM, Oliver Clarke <[log in to unmask]
>> <mailto:[log in to unmask]>> wrote:
>>
>> Also along the same lines, I would love to see a "local
>> ramachandran" - a ramachandran plot, but only displaying those
>> residues within a certain distance from the center of rotation,
>> say 20 Å. The ramachandran plot is very handy for validation and
>> identification of troublesome regions, but it gets very crowded
>> for large, multi chain structures, and I feel like this would be a
>> handy aid during refinement.
>>
>> Cheers,
>> Oliver.
>>
>>
>
>--
>Jan Stransky, PhD student
>Institute of Biotechnology, CAS
>Laboratory of structure and function of biomolecules
>Nad Safinou II 366
>Vestec
>Czech Republic
>
>Tel.: +420226201570
>
>
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