Hi Anderson,
Thanks for the reply. I attached the two design matrices and my two randomise commands.
design 1 (+ contrasts):
randomise -i shape_analysis/EpiBios_EEG_des9_allfactors_${struct}.nii.gz -m shape_analysis/EpiBios_EEG_des9_allfactor
s_${struct}_mask.nii.gz -o shape_analysis/EpiBios_EEG_des9_allfactors_${struct}_randT2 -d EpiBios_EEG_des9_allfactors
.mat -t EpiBios_EEG_des9_allfactors.con -D --T2 -n 5000
design 2 (- contrasts):
randomise -i shape_analysis/EpiBios_EEG_des9b_allfactors_negative_${struct}.nii.gz -m shape_analysis/EpiBios_EEG_des9
b_allfactors_negative_${struct}_mask.nii.gz -o shape_analysis/EpiBios_EEG_des9b_allfactors_negative_${struct}_randT2
-d EpiBios_EEG_des9b_allfactors_negative.mat -t EpiBios_EEG_des9b_allfactors_negative.con -D --T2 -n 5000
Thanks again for any help,
Evan
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