Hi Mintu
You can use Chimera to calculate rotation angel.
http://www.cgl.ucsf.edu/chimera/videodoc/AlignDomains/
Veerendra
On 21/4/15 3:39 PM, "Mintu Chandra" <[log in to unmask]> wrote:
>Dear All,
>I am working with a protein containing tandem domains, connected with
>3-4 residue linker. I want to calculate the relative
>motion/orientation of one domain with respect to the hinge region as
>well as with respect to the other domain. Both the domains have very
>less seq. identity (<20%). Please suggest some web server to calculate
>the same.
>
>Thanks,
>
>Mintu
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