Hi Danny,
I don't have reg_standard folders in my lower-level feat directories. My understanding was that reg_standard was created when you run the second-level fixed-effects analysis, which I can't run because of the error about registration not being run for all of the FEAT directories.
Thanks,
Matt
On Wed, 15 Apr 2015 13:43:45 -0700, Daniel Kim <[log in to unmask]> wrote:
>Hi Matt
>
>Just taking a wild guess here, but have you checked to see if you have both reg and reg_standard folders in your FEAT directories?
>
>Danny Kim
>On 2015-04-15, at 1:12 PM, Matt Sutterer wrote:
>
>Hello,
>
>I am trying to average across multiple sessions using a fixed-effects analysis, where my inputs are lower-level FEAT directories from each session.
>
>Each session was registered from functional to standard space using FNIRT, and the nonlinear registration files were overwritten to the <session>.feat/reg directory, followed by running updatefeatreg for each session�s feat directory (as outlined in: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FEAT/FAQ#How_can_I_insert_a_custom_registration_into_a_FEAT_analysis.3F).
>
>When I try to run my fixed-level analysis to obtain the session mean, I keep getting an error that �Registration has not been run for all of the FEAT directories that you have selected for group analysis�, despite the fact the registration directory is clearly present for each run. Are there particular registration files the higher-level analysis is looking for?
>
>Thank you,
>
>Matt Sutterer
>
>Tranel Lab (Dept. of Neurology)
>Human Brain Research Laboratory (Dept. of Neurosurgery)
>The University of Iowa
>
>
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